Li, J., Horstman, B., & Chen, Q.(2011).Detecting epistatic effects in association studies at a genomic level based on an ensemble approach..Bioinformatics (Oxford, England),27(13),i222-9.
Cakmak, A., Qi, X., Coskun, S., Das, M., Cheng, E., Cicek, A., Lai, N., Ozsoyoglu, T., & Ozsoyoglu, Z. M.(2011).PathCase-SB Architecture and Database Design.BMC Systems Biology Journal,5(9).
Nibbe, R., Chowdhury, S., Koyutürk, M., Ewing, R., & Chance, M.(2011).Protein-protein interaction networks and subnetworks in the biology of disease..Wiley interdisciplinary reviews. Systems biology and medicine,3(3),357-67.
Chowdhury, S., Nibbe, R., Chance, M., & Koyutürk, M.(2011).Subnetwork state functions define dysregulated subnetworks in cancer..Journal of computational biology,18(3),263-81.
Xiao, X., Xie, T., Tillmann, N., & De Halleux, J.(2011).Precise Identification of Problems for Structural Test Generation.International Conference on Software Engineering (ICSE).
Xiao, X.(2011).Problem identification for structural test generation: first step towards cooperative developer testing.International Conference on Software Engineering (ICSE), ACM SRC.
Ayday, E., & Fekri, F.(2011).Iterative trust and reputation management using belief propagation.IEEE Transactions on Dependable and Secure Computing,9(3),375--386.
Liu, Y., Patel, S., Nibbe, R., Maxwell, S., Chowdhury, S., Koyutürk, M., Zhu, X., Larkin, E., Buxbaum, S., Punjabi, N., Gharib, S., Redline, S., & Chance, M.(2011).Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea..Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
Kinsella, T., Gurkan Cavusoglu, E., Du, W., & Loparo, K. A.(2011).Integration of principles of systems biology and radiation biology: toward development of in silico models to optimize IUdR-mediated radiosensitization of DNA mismatch repair-deficient (damage tolerant) human cancers.Frontiers in Oncology,1
Cakmak, A., Hanson, R., & Ozsoyoglu, T.(2010).Querying Metabolism under Different Physiological Conditions.Journal of Bioinformatics and Computational Biology,8(2).
Li , X., Yin, X., & Li, J.(2010).Efficient identification of identical-by-descent status in pedigrees with many untyped individuals..Bioinformatics (Oxford, England),26(12),i191-8.
Yin, X., & Li, J.(2010).Detecting copy number variations from array CGH data based on a conditional random field model..Journal of bioinformatics and computational biology,8(2),295-314.